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Ternary structure of 14-3-3sigma, interaction cassette phosphopeptide, and Fusicoccin-A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3P1N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 the complex was set up for hanging-drop crystallization with precipitation buffer consisting of 0.095 M HEPES (pH 7.1), 27% or 29% (v/v) PEG 400, 0.19 M CaCl2 and 5% (v/v) glycerol
Crystal Properties Matthews coefficient Solvent content 2.64 53.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.731 α = 90 b = 111.682 β = 90 c = 62.724 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 X 2M 2022-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87313 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 41.74 100 0.998 13.8 12.9 57415
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 100 0.714 1.5 12.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 41.74 54607 2810 99.95 0.15236 0.15083 0.151 0.18223 0.1819 RANDOM 17.519
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.83 0.7 -1.53
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 13.997 r_long_range_B_other 12.934 r_dihedral_angle_3_deg 11.071 r_scangle_other 9.163 r_dihedral_angle_2_deg 8.628 r_mcangle_it 7.529 r_mcangle_other 7.526 r_scbond_it 6.362 r_scbond_other 6.36 r_dihedral_angle_1_deg 5.099
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 13.997 r_long_range_B_other 12.934 r_dihedral_angle_3_deg 11.071 r_scangle_other 9.163 r_dihedral_angle_2_deg 8.628 r_mcangle_it 7.529 r_mcangle_other 7.526 r_scbond_it 6.362 r_scbond_other 6.36 r_dihedral_angle_1_deg 5.099 r_mcbond_it 5.074 r_mcbond_other 5.073 r_rigid_bond_restr 3.854 r_angle_refined_deg 1.889 r_angle_other_deg 0.675 r_chiral_restr 0.095 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1892 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement DIALS data collection Aimless data scaling MOLREP phasing