☰ Navigation Tabs
Crystal structure of CbcA periplasmic domain from Geobacter sulfurreducens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293.15 1.4 M trisodium citrate and 0.1 M sodium HEPES (pH 8)
Crystal Properties Matthews coefficient Solvent content 3.06 59.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.436 α = 90 b = 94.167 β = 90 c = 114.175 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2023-07-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.873 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 94.17 100 0.199 0.207 0.056 0.991 9 13.7 58831
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.96 99.9 0.308 14.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.91 72.752 58760 2876 99.985 0.202 0.1991 0.1996 0.2531 0.2542 51.275
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.253 -0.43 0.684
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.96 r_dihedral_angle_6_deg 14.186 r_lrange_it 9.539 r_dihedral_angle_2_deg 8.005 r_dihedral_angle_1_deg 7.115 r_scangle_it 6.686 r_mcangle_it 5.668 r_scbond_it 4.412 r_mcbond_it 3.632 r_angle_refined_deg 2.177
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.96 r_dihedral_angle_6_deg 14.186 r_lrange_it 9.539 r_dihedral_angle_2_deg 8.005 r_dihedral_angle_1_deg 7.115 r_scangle_it 6.686 r_mcangle_it 5.668 r_scbond_it 4.412 r_mcbond_it 3.632 r_angle_refined_deg 2.177 r_nbtor_refined 0.302 r_nbd_refined 0.226 r_symmetry_nbd_refined 0.216 r_xyhbond_nbd_refined 0.2 r_symmetry_xyhbond_nbd_refined 0.155 r_metal_ion_refined 0.144 r_chiral_restr 0.113 r_bond_refined_d 0.015 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4256 Nucleic Acid Atoms Solvent Atoms 316 Heterogen Atoms 605
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling AutoSol phasing