27GZ | pdb_000027gz

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3AOS

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	0.1M sodium acetate (pH 5.6), 1.7M ammonium sulfate, 3% (v/v) 1,6-hexanediol

Crystal Properties
Matthews coefficient	Solvent content
3.06	59.9

Symmetry
Space Group	P 63 2 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	95	PIXEL	DECTRIS PILATUS 2M		2020-12-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE AR-NW12A	1.0000	Photon Factory	AR-NW12A

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.4	100	100	0.178	0.029	0.999	19.3	36.9		12778

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.4	2.53			2.063	0.333	0.866	2.3

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.4	38.89	12715	661	99.616	0.238	0.2355	0.2411	0.285	0.2866	RANDOM	58.475

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.478	-0.739		-1.478		4.795

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.308
r_dihedral_angle_6_deg	12.512
r_lrange_it	6.887
r_lrange_other	6.866
r_dihedral_angle_2_deg	6.793
r_dihedral_angle_1_deg	5.887
r_scangle_it	4.382
r_scangle_other	4.38
r_mcangle_other	4.137
r_mcangle_it	4.135

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.308
r_dihedral_angle_6_deg	12.512
r_lrange_it	6.887
r_lrange_other	6.866
r_dihedral_angle_2_deg	6.793
r_dihedral_angle_1_deg	5.887
r_scangle_it	4.382
r_scangle_other	4.38
r_mcangle_other	4.137
r_mcangle_it	4.135
r_scbond_it	2.58
r_scbond_other	2.578
r_mcbond_it	2.485
r_mcbond_other	2.469
r_angle_refined_deg	0.948
r_angle_other_deg	0.355
r_symmetry_nbd_refined	0.21
r_symmetry_nbd_other	0.197
r_nbd_refined	0.193
r_nbtor_refined	0.169
r_nbd_other	0.139
r_xyhbond_nbd_refined	0.132
r_symmetry_nbtor_other	0.079
r_symmetry_xyhbond_nbd_refined	0.079
r_chiral_restr	0.049
r_bond_refined_d	0.003
r_gen_planes_refined	0.003
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1693
Nucleic Acid Atoms
Solvent Atoms	48
Heterogen Atoms	21

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.