Experiment: 26LN

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3MRW

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.7	298	PEG 6000, 0.1M Sodium Phosphate

Crystal Properties
Matthews coefficient	Solvent content
2.4	48.76

Symmetry
Space Group	H 3

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X 9M		2023-07-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID30B	0.87313	ESRF	ID30B

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.408	37.644	99.8	0.034	0.042	0.025	0.999	18.1	5.2		48750			21.5

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.41	1.43	98.9		1.284	0.476	1	5.4

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3MRW	1.408	37.644	48641	2465	99.529	0.18	0.1788	0.187	0.2035	0.2108	22.916

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.356	-0.178		-0.356		1.156

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.716
r_dihedral_angle_2_deg	13.202
r_dihedral_angle_3_deg	13.081
r_dihedral_angle_1_deg	5.867
r_lrange_it	5.756
r_lrange_other	5.625
r_scangle_it	4.913
r_scangle_other	4.911
r_scbond_it	3.549
r_scbond_other	3.549

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.716
r_dihedral_angle_2_deg	13.202
r_dihedral_angle_3_deg	13.081
r_dihedral_angle_1_deg	5.867
r_lrange_it	5.756
r_lrange_other	5.625
r_scangle_it	4.913
r_scangle_other	4.911
r_scbond_it	3.549
r_scbond_other	3.549
r_mcangle_it	2.776
r_mcangle_other	2.776
r_mcbond_it	2.128
r_mcbond_other	2.128
r_angle_refined_deg	1.894
r_angle_other_deg	0.667
r_symmetry_nbd_refined	0.446
r_nbd_other	0.251
r_nbd_refined	0.245
r_symmetry_xyhbond_nbd_other	0.219
r_xyhbond_nbd_refined	0.207
r_symmetry_nbd_other	0.203
r_nbtor_refined	0.182
r_symmetry_xyhbond_nbd_refined	0.152
r_chiral_restr	0.097
r_symmetry_nbtor_other	0.092
r_bond_refined_d	0.011
r_gen_planes_refined	0.01
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1920
Nucleic Acid Atoms
Solvent Atoms	293
Heterogen Atoms	56

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

26LN | pdb_000026ln