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Crystal structure of Candida albicans Eukaryotic translation initiation factor 5A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 295 5% PEG 3350, 200mM sodium formiate, 10% glycerol, 50mM MES pH 6
Crystal Properties Matthews coefficient Solvent content 13.83 91.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.253 α = 90 b = 35.149 β = 92.997 c = 337.128 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL RIGAKU HyPix-6000HE 2026-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE RIGAKU PhotonJet-S 1.54184
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 19.39 96 0.288 0.388 0.259 0.91 4.6 3.1 24965
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.72 95.6 1.345 1.798 1.185 0.277 1.3 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.6 19.39 24958 1296 95.361 0.334 0.333 0.333 0.3484 0.3484 RANDOM 27.644
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 10.596 0.31 -22.54 11.944
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.485 r_dihedral_angle_3_deg 22.497 r_lrange_it 15.956 r_dihedral_angle_6_deg 13.748 r_dihedral_angle_1_deg 10.473 r_mcangle_it 9.694 r_scangle_it 9.098 r_mcbond_it 6.533 r_scbond_it 6.304 r_angle_refined_deg 3.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.485 r_dihedral_angle_3_deg 22.497 r_lrange_it 15.956 r_dihedral_angle_6_deg 13.748 r_dihedral_angle_1_deg 10.473 r_mcangle_it 9.694 r_scangle_it 9.098 r_mcbond_it 6.533 r_scbond_it 6.304 r_angle_refined_deg 3.102 r_symmetry_nbd_refined 0.381 r_symmetry_xyhbond_nbd_refined 0.375 r_nbtor_refined 0.261 r_chiral_restr 0.199 r_nbd_refined 0.191 r_xyhbond_nbd_refined 0.149 r_bond_refined_d 0.017 r_gen_planes_refined 0.013 r_ext_dist_refined_b 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1054 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose Aimless data scaling gemmi data extraction REFMAC refinement gemmi data extraction PHASER phasing