Experiment: 24TF

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	24TD

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	1.6 M ammonium sulfate, 0.1 M MES pH 6.5, 10% dioxane

Crystal Properties
Matthews coefficient	Solvent content
2.03	39.33

Symmetry
Space Group	P 43 21 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	95	CCD	ADSC QUANTUM 270		2013-06-19	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE AR-NE3A	1.0000	Photon Factory	AR-NE3A

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.7	100	97.7	0.193	16.1	13.6		48189

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.7	1.74			0.754	5.5

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.7	48.464	48045	2416	97.714	0.15	0.1486	0.1631	0.1808	0.1897	RANDOM	9.731

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.048			-0.048		0.097

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.024
r_dihedral_angle_3_deg	10.323
r_dihedral_angle_1_deg	7.229
r_dihedral_angle_2_deg	6.208
r_lrange_it	3.387
r_lrange_other	2.888
r_angle_refined_deg	1.169
r_scangle_it	1.153
r_scangle_other	1.153
r_mcangle_it	0.814

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.024
r_dihedral_angle_3_deg	10.323
r_dihedral_angle_1_deg	7.229
r_dihedral_angle_2_deg	6.208
r_lrange_it	3.387
r_lrange_other	2.888
r_angle_refined_deg	1.169
r_scangle_it	1.153
r_scangle_other	1.153
r_mcangle_it	0.814
r_mcangle_other	0.814
r_scbond_it	0.712
r_scbond_other	0.712
r_mcbond_it	0.481
r_mcbond_other	0.477
r_angle_other_deg	0.473
r_nbd_refined	0.2
r_symmetry_nbd_other	0.198
r_nbtor_refined	0.178
r_nbd_other	0.162
r_symmetry_xyhbond_nbd_refined	0.134
r_xyhbond_nbd_refined	0.129
r_symmetry_nbd_refined	0.089
r_symmetry_nbtor_other	0.077
r_chiral_restr	0.062
r_gen_planes_refined	0.005
r_bond_refined_d	0.003
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3547
Nucleic Acid Atoms
Solvent Atoms	574
Heterogen Atoms	85

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

24TF | pdb_000024tf