24GF | pdb_000024gf

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
in silico model	AlphaFold

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	PEG3350, BIS-TRIS, pH 6.5

Crystal Properties
Matthews coefficient	Solvent content
2.5	50.71

Symmetry
Space Group	C 1 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2025-08-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	AUSTRALIAN SYNCHROTRON BEAMLINE MX2	0.954	Australian Synchrotron	MX2

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.96	48.07	99.7	1	12.1	3.5		25729

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.96	2.01			0.93

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.958	42.218	25729	1218	99.605	0.146	0.1439	0.1577	0.1779	0.1825	RANDOM	14.476

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.234		-0.527	0.892		-0.024

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.409
r_dihedral_angle_3_deg	11.526
r_dihedral_angle_1_deg	6.402
r_dihedral_angle_2_deg	5.08
r_lrange_it	4.745
r_lrange_other	4.52
r_scangle_it	3.168
r_scangle_other	3.167
r_scbond_other	1.982
r_scbond_it	1.981

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.409
r_dihedral_angle_3_deg	11.526
r_dihedral_angle_1_deg	6.402
r_dihedral_angle_2_deg	5.08
r_lrange_it	4.745
r_lrange_other	4.52
r_scangle_it	3.168
r_scangle_other	3.167
r_scbond_other	1.982
r_scbond_it	1.981
r_mcangle_other	1.515
r_mcangle_it	1.513
r_angle_refined_deg	1.427
r_mcbond_it	0.999
r_mcbond_other	0.998
r_angle_other_deg	0.504
r_nbd_refined	0.204
r_symmetry_xyhbond_nbd_refined	0.197
r_nbtor_refined	0.183
r_symmetry_nbd_other	0.181
r_xyhbond_nbd_refined	0.147
r_nbd_other	0.097
r_symmetry_nbtor_other	0.075
r_chiral_restr	0.072
r_symmetry_nbd_refined	0.032
r_gen_planes_refined	0.007
r_bond_refined_d	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2461
Nucleic Acid Atoms
Solvent Atoms	316
Heterogen Atoms	12

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.