☰ Navigation Tabs
Crystal structure of Apo FtsZ from Acinetobacter baumannii
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6UMK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M MIB, pH-9.0, 25% PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.25 45.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.944 α = 76.409 b = 44.826 β = 81.305 c = 85.392 γ = 64.45
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2023-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87313 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 39.614 92.7 0.075 0.98 4 1.9 10579
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.18 0.239 0.88
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6UMK 3 39.614 10578 1011 92.668 0.249 0.2454 0.247 0.2851 0.2847 72.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.102 1.329 0.887 1.571 1.406 -2.179
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.917 r_dihedral_angle_3_deg 24.549 r_dihedral_angle_6_deg 16.116 r_lrange_it 11.112 r_lrange_other 11.111 r_scangle_it 7.519 r_scangle_other 7.518 r_mcangle_it 7.281 r_mcangle_other 7.28 r_scbond_it 4.699
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.917 r_dihedral_angle_3_deg 24.549 r_dihedral_angle_6_deg 16.116 r_lrange_it 11.112 r_lrange_other 11.111 r_scangle_it 7.519 r_scangle_other 7.518 r_mcangle_it 7.281 r_mcangle_other 7.28 r_scbond_it 4.699 r_scbond_other 4.698 r_mcbond_it 4.417 r_mcbond_other 4.414 r_dihedral_angle_1_deg 3.544 r_angle_refined_deg 0.953 r_nbd_other 0.479 r_symmetry_nbd_refined 0.443 r_symmetry_xyhbond_nbd_refined 0.41 r_angle_other_deg 0.387 r_nbd_refined 0.247 r_symmetry_nbd_other 0.245 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.15 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.042 r_symmetry_xyhbond_nbd_other 0.02 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4461 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing