Experiment: 22HI

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	22HH

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	ammonium sulfate, bis-Tris, cyclic beta-1,2-glucoheptadecaose

Crystal Properties
Matthews coefficient	Solvent content
2.66	53.77

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2023-12-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE BL-5A	1.000	Photon Factory	BL-5A

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.95	47.18	98.5	0.997	12.8	12.4		41270

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.95	2	97.4		0.942

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.95	47.176	41091	1975	97.878	0.249	0.2472	0.2534	0.2836	0.2897	31.102

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.07			0.039		0.032

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.723
r_dihedral_angle_3_deg	15.457
r_dihedral_angle_2_deg	8.757
r_dihedral_angle_1_deg	6.924
r_lrange_it	5.381
r_lrange_other	5.381
r_scangle_it	4.157
r_scangle_other	4.156
r_mcangle_it	3.254
r_mcangle_other	3.254

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.723
r_dihedral_angle_3_deg	15.457
r_dihedral_angle_2_deg	8.757
r_dihedral_angle_1_deg	6.924
r_lrange_it	5.381
r_lrange_other	5.381
r_scangle_it	4.157
r_scangle_other	4.156
r_mcangle_it	3.254
r_mcangle_other	3.254
r_scbond_it	2.797
r_scbond_other	2.796
r_mcbond_it	2.393
r_mcbond_other	2.393
r_angle_refined_deg	1.477
r_angle_other_deg	0.829
r_nbd_refined	0.373
r_nbd_other	0.259
r_xyhbond_nbd_other	0.227
r_symmetry_nbd_other	0.226
r_xyhbond_nbd_refined	0.209
r_symmetry_nbd_refined	0.199
r_symmetry_xyhbond_nbd_refined	0.199
r_nbtor_refined	0.189
r_symmetry_nbtor_other	0.081
r_chiral_restr	0.07
r_gen_planes_other	0.008
r_gen_planes_refined	0.007
r_bond_refined_d	0.006
r_bond_other_d	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3358
Nucleic Acid Atoms
Solvent Atoms	104
Heterogen Atoms	193

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

22HI | pdb_000022hi