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Alcohol Oxidase Mod1p from Ogataea methanolica
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5HSA
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.95 f_angle_d 0.524 f_chiral_restr 0.046 f_plane_restr 0.004 f_bond_d 0.002
Sample Mod1p octamer in complex with a-FAD
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 66366 Reported Resolution (Å) 1.93 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Number of Particles 66366 Reported Resolution (Å) 1.94 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Number of Particles 66366 Reported Resolution (Å) 1.93 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Number of Particles 66366 Reported Resolution (Å) 1.94 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (5HSA) Refinement Space Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 42.7
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model JEOL CRYO ARM 300 Minimum Defocus (nm) 500 Maximum Defocus (nm) 3800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION EMAN2 IMAGE ACQUISITION SerialEM CTF CORRECTION RELION MODEL FITTING UCSF Chimera RECONSTRUCTION RELION PARTICLE SELECTION EMAN2 RECONSTRUCTION RELION MODEL REFINEMENT PHENIX 1.20_4459
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING ONLY PHASE FLIPPING ONLY