1ZMV

Catalytic and ubiqutin-associated domains of MARK2/PAR-1: K82R mutant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5293PEG3350, Ammonium Sulphate, BIS-TRIS, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.8256

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 121.191α = 90
b = 121.191β = 90
c = 99.66γ = 120
Symmetry
Space GroupP 61

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2004-07-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X130.8043EMBL/DESY, HAMBURGX13

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.10551.7898.20.109141481314813
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.1053.1599.32

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1Y8G3.10551.78148141481474098.20.202350.202350.199830.25108RANDOM68.393
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.350.170.35-0.52
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.21
r_dihedral_angle_3_deg21.516
r_dihedral_angle_4_deg19.398
r_dihedral_angle_1_deg7.57
r_angle_refined_deg1.955
r_symmetry_hbond_refined0.395
r_nbtor_refined0.342
r_nbd_refined0.269
r_symmetry_vdw_refined0.222
r_xyhbond_nbd_refined0.151
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.21
r_dihedral_angle_3_deg21.516
r_dihedral_angle_4_deg19.398
r_dihedral_angle_1_deg7.57
r_angle_refined_deg1.955
r_symmetry_hbond_refined0.395
r_nbtor_refined0.342
r_nbd_refined0.269
r_symmetry_vdw_refined0.222
r_xyhbond_nbd_refined0.151
r_chiral_restr0.114
r_bond_refined_d0.022
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4667
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement