☰ Navigation Tabs
Crystal Structure of a major nematode C.elegans specific GST (CE01613)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TW9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 65% MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.5 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.96 α = 90 b = 88.272 β = 90 c = 93.596 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 RH-COATED SI MONOCHROMATIC MIRRORS 2003-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 0.9160 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 25 99.9 0.1 28.3 6.4 33787 33450 21.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 99.9 0.286 5.4 3.8 1636
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1TW9 2.01 25 32715 32388 867 99.57 0.1798 0.1522 0.15069 0.1545 0.20912 0.2099 RANDOM 20.599
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.8 0.89 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.81 r_scangle_it 5.194 r_scbond_it 3.392 r_mcangle_it 2.057 r_angle_refined_deg 1.748 r_angle_other_deg 1.156 r_mcbond_it 1.146 r_chiral_restr 0.286 r_nbd_other 0.26 r_symmetry_vdw_other 0.244
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.81 r_scangle_it 5.194 r_scbond_it 3.392 r_mcangle_it 2.057 r_angle_refined_deg 1.748 r_angle_other_deg 1.156 r_mcbond_it 1.146 r_chiral_restr 0.286 r_nbd_other 0.26 r_symmetry_vdw_other 0.244 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.2 r_symmetry_hbond_refined 0.196 r_xyhbond_nbd_refined 0.177 r_nbtor_other 0.09 r_bond_refined_d 0.022 r_gen_planes_other 0.015 r_gen_planes_refined 0.012 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3298 Nucleic Acid Atoms Solvent Atoms 459 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement Adxv data processing DENZO data reduction SCALEPACK data scaling AMoRE phasing