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Crystal structure of human Zeta-Crystallin with bound NADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 14.4% PEG 10K, 0.16 calcium
acetate, 20% glycerol, 0.08 M cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.9 56.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.484 α = 90 b = 110.239 β = 90 c = 77.253 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS HTC 2004-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 45.36 99.8 0.084 0.084 11.5 3.5 73177 73050 22.544
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95 99.5 0.578 0.578 2 3.3 10524
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 77.15 73008 71063 1945 99.77 0.17062 0.17062 0.1696 0.1679 0.20667 RANDOM 27.958
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.63 0.37 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.604 r_dihedral_angle_4_deg 25.691 r_dihedral_angle_3_deg 13.393 r_dihedral_angle_1_deg 6.552 r_scangle_it 3.299 r_scbond_it 2.155 r_angle_refined_deg 1.572 r_mcangle_it 1.188 r_mcbond_it 0.778 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.604 r_dihedral_angle_4_deg 25.691 r_dihedral_angle_3_deg 13.393 r_dihedral_angle_1_deg 6.552 r_scangle_it 3.299 r_scbond_it 2.155 r_angle_refined_deg 1.572 r_mcangle_it 1.188 r_mcbond_it 0.778 r_nbtor_refined 0.299 r_symmetry_vdw_refined 0.295 r_nbd_refined 0.198 r_xyhbond_nbd_refined 0.139 r_symmetry_hbond_refined 0.124 r_chiral_restr 0.103 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4866 Nucleic Acid Atoms Solvent Atoms 684 Heterogen Atoms 136
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction CCP4 data scaling PHASER phasing