X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.22912M ammonium sulfate, 100mM phosphate-citrate, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 291.0 K
Crystal Properties
Matthews coefficientSolvent content
2.346.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.719α = 90
b = 75.719β = 90
c = 177.783γ = 90
Symmetry
Space GroupI 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayIMAGE PLATEMAC Science DIP-2030B2004-02-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.645098.40.06634.79.63184231548
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.641.790.50.24428.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTwild-type BstHpr1.65202987429874158998.90.207420.205340.24653RANDOM23.078
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.550.55-1.1
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it6.934
r_dihedral_angle_1_deg5.991
r_scbond_it4.657
r_mcangle_it3.571
r_mcbond_it2.469
r_angle_refined_deg1.559
r_angle_other_deg1.18
r_symmetry_hbond_refined0.499
r_nbd_other0.258
r_nbd_refined0.226
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it6.934
r_dihedral_angle_1_deg5.991
r_scbond_it4.657
r_mcangle_it3.571
r_mcbond_it2.469
r_angle_refined_deg1.559
r_angle_other_deg1.18
r_symmetry_hbond_refined0.499
r_nbd_other0.258
r_nbd_refined0.226
r_symmetry_vdw_refined0.226
r_symmetry_vdw_other0.194
r_xyhbond_nbd_refined0.169
r_chiral_restr0.096
r_nbtor_other0.086
r_bond_refined_d0.017
r_gen_planes_refined0.009
r_bond_other_d0.003
r_gen_planes_other0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1946
Nucleic Acid Atoms
Solvent Atoms372
Heterogen Atoms15

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing