Experiment: 1Y51

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	Other		wild-type BstHpr

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	4.2	291	2M ammonium sulfate, 100mM phosphate-citrate, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 291.0 K

Crystal Properties
Matthews coefficient	Solvent content
2.3	46.5

Symmetry
Space Group	I 41 2 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray		IMAGE PLATE	MAC Science DIP-2030B		2004-02-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.64	50	98.4	0.066	34.7	9.6	31842	31548

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.64	1.7	90.5		0.244	2	8.3

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	wild-type BstHpr	1.65	20	29874	29874	1589	98.9	0.20742	0.20534	0.22	0.24653	0.26	RANDOM	23.078

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.55			0.55		-1.1

RMS Deviations
Key	Refinement Restraint Deviation
r_scangle_it	6.934
r_dihedral_angle_1_deg	5.991
r_scbond_it	4.657
r_mcangle_it	3.571
r_mcbond_it	2.469
r_angle_refined_deg	1.559
r_angle_other_deg	1.18
r_symmetry_hbond_refined	0.499
r_nbd_other	0.258
r_nbd_refined	0.226

RMS Deviations
Key	Refinement Restraint Deviation
r_scangle_it	6.934
r_dihedral_angle_1_deg	5.991
r_scbond_it	4.657
r_mcangle_it	3.571
r_mcbond_it	2.469
r_angle_refined_deg	1.559
r_angle_other_deg	1.18
r_symmetry_hbond_refined	0.499
r_nbd_other	0.258
r_nbd_refined	0.226
r_symmetry_vdw_refined	0.226
r_symmetry_vdw_other	0.194
r_xyhbond_nbd_refined	0.169
r_chiral_restr	0.096
r_nbtor_other	0.086
r_bond_refined_d	0.017
r_gen_planes_refined	0.009
r_bond_other_d	0.003
r_gen_planes_other	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1946
Nucleic Acid Atoms
Solvent Atoms	372
Heterogen Atoms	15

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

1Y51 | pdb_00001y51