1Y2O

Structure of N-terminal domain IRSp53/BAIAP2


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
1.9233.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 49.879α = 90
b = 64.164β = 106.18
c = 74.586γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42004-07-25MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX14.20.9781, 0.9776, 0.9649SRSPX14.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.247.897.40.0560.05625.93.9224592245935.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.22.3293.70.1920.1928.43.73133

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.247.82120821208112797.190.230210.230210.228310.26683RANDOM36.328
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.39-1.54-0.07-2.17
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.113
r_dihedral_angle_3_deg16.82
r_dihedral_angle_4_deg15.757
r_dihedral_angle_1_deg4.206
r_scangle_it2.822
r_scbond_it1.829
r_mcangle_it1.06
r_angle_refined_deg1.032
r_mcbond_it0.723
r_nbtor_refined0.289
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.113
r_dihedral_angle_3_deg16.82
r_dihedral_angle_4_deg15.757
r_dihedral_angle_1_deg4.206
r_scangle_it2.822
r_scbond_it1.829
r_mcangle_it1.06
r_angle_refined_deg1.032
r_mcbond_it0.723
r_nbtor_refined0.289
r_nbd_refined0.196
r_symmetry_vdw_refined0.181
r_symmetry_hbond_refined0.165
r_xyhbond_nbd_refined0.155
r_chiral_restr0.079
r_bond_refined_d0.01
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3943
Nucleic Acid Atoms
Solvent Atoms221
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
SOLVEphasing