1XG2

Crystal structure of the complex between pectin methylesterase and its inhibitor protein


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6294magnesium sulfate, MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
3.4964.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.379α = 90
b = 90.379β = 90
c = 149.095γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHmirrors2004-02-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 5.2R0.99ELETTRA5.2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.95097.50.082561805618011
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.91.9792.50.338

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT1.9255101951019273095.840.199410.199410.197740.23176RANDOM15.18
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.130.060.13-0.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.869
r_scangle_it3.377
r_scbond_it1.947
r_angle_refined_deg1.211
r_angle_other_deg1.174
r_mcangle_it1.138
r_mcbond_it0.592
r_symmetry_hbond_refined0.309
r_symmetry_vdw_refined0.28
r_symmetry_vdw_other0.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.869
r_scangle_it3.377
r_scbond_it1.947
r_angle_refined_deg1.211
r_angle_other_deg1.174
r_mcangle_it1.138
r_mcbond_it0.592
r_symmetry_hbond_refined0.309
r_symmetry_vdw_refined0.28
r_symmetry_vdw_other0.25
r_nbd_other0.237
r_nbd_refined0.208
r_xyhbond_nbd_refined0.187
r_nbtor_other0.082
r_chiral_restr0.074
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_gen_planes_other0.004
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3600
Nucleic Acid Atoms
Solvent Atoms453
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing