1WVV

Crystal structure of chitinase C mutant E147Q


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.6293Sodium chloride, Sodium acetate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.159.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 127.902α = 90
b = 127.902β = 90
c = 127.902γ = 90
Symmetry
Space GroupP 21 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95CCDADSC QUANTUM 42003-10-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE BL-6A1.0000Photon FactoryBL-6A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1256.791000.0620.0626.920.9472364723630.337
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.051000.2420.242313.63466

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRASTHROUGHOUT256.8448344483424011000.16560.16560.163880.19794RANDOM27.077
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.422
r_dihedral_angle_4_deg19.364
r_dihedral_angle_3_deg11.747
r_dihedral_angle_1_deg5.452
r_scangle_it2.876
r_scbond_it2.036
r_mcangle_it1.351
r_angle_refined_deg1.338
r_mcbond_it1.126
r_angle_other_deg0.868
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.422
r_dihedral_angle_4_deg19.364
r_dihedral_angle_3_deg11.747
r_dihedral_angle_1_deg5.452
r_scangle_it2.876
r_scbond_it2.036
r_mcangle_it1.351
r_angle_refined_deg1.338
r_mcbond_it1.126
r_angle_other_deg0.868
r_mcbond_other0.233
r_nbd_refined0.213
r_symmetry_vdw_other0.191
r_nbtor_refined0.189
r_nbd_other0.177
r_xyhbond_nbd_refined0.154
r_symmetry_hbond_refined0.153
r_symmetry_vdw_refined0.1
r_chiral_restr0.095
r_nbtor_other0.084
r_bond_refined_d0.015
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3541
Nucleic Acid Atoms
Solvent Atoms343
Heterogen Atoms25

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
MLPHAREphasing