Solution structure of the UBA domain from p47, a major cofactor of the AAA ATPase p97
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_13C-separated_NOESY | 15N, 13C double labelled p47 residues 1-174 | 20mM sodium acetate | 20mM NaAc | 5.3 | 1 atm | 298 | |
| 2 | 3D_15N-separated_NOESY | 15N labelled p47 residues 1-174 | 20mM sodium acetate | 20mM NaAc | 5.3 | 1 atm | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DRX | 500 |
| 2 | Varian | INOVA | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing torsion angle dynamics | NMRPipe | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations,structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | 1.0 | F.Delaglio |
| 2 | collection | XwinNMR | 1.0 | Burker |
| 3 | data analysis | NMRView | 4.0.3 | B.Johnson |
| 4 | structure solution | ARIA | 1.0 | M.Nilges, J.P.Linge |
| 5 | refinement | ARIA | 1.0 | M.Nilges, J.P.Linge |
