1U9H

Heterocyclic Peptide Backbone Modification in GCN4-pLI Based Coiled Coils: Replacement of E(22)L(23)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52950.16 M magnesium acetate tetrahydrate, 0.08 M sodium cacodylate, pH 6.5, 16% w/v PEG 8000, 20% v/v anhydrous glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.9157.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.404α = 90
b = 45.404β = 90
c = 90.923γ = 90
Symmetry
Space GroupP 43 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVosmic confocal mirrors2004-04-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1745.1798.90.0527.26.254352
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.172.2595.70.312.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.1745.17519024498.80.248570.248570.246870.28418RANDOM36.136
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.260.26-0.51
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.111
r_dihedral_angle_3_deg19.451
r_dihedral_angle_4_deg19.172
r_dihedral_angle_1_deg10.88
r_scangle_it3.732
r_scbond_it2.361
r_angle_refined_deg2.001
r_mcangle_it1.535
r_angle_other_deg1.023
r_mcbond_it0.924
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.111
r_dihedral_angle_3_deg19.451
r_dihedral_angle_4_deg19.172
r_dihedral_angle_1_deg10.88
r_scangle_it3.732
r_scbond_it2.361
r_angle_refined_deg2.001
r_mcangle_it1.535
r_angle_other_deg1.023
r_mcbond_it0.924
r_nbd_refined0.24
r_symmetry_vdw_refined0.235
r_symmetry_hbond_refined0.228
r_xyhbond_nbd_refined0.226
r_nbd_other0.217
r_symmetry_vdw_other0.21
r_mcbond_other0.21
r_nbtor_refined0.195
r_chiral_restr0.105
r_nbtor_other0.102
r_bond_refined_d0.019
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms527
Nucleic Acid Atoms
Solvent Atoms45
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
CrystalCleardata reduction
CrystalCleardata scaling
PHASERphasing