1U6E

1.85 Angstrom Crystal Structure of the C112A Mutant of Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase III (FabH)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52932M NaCl, 100mM potassium/sodium phosphate 100 mM sodium Mes buffer pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.1943.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.263α = 90
b = 109.021β = 90
c = 110.976γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IIOsmic Confocal Optics2002-09-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.852797.60.0449.14.6580025657626.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.90.820.13552

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB Entry 1HZP1.8526.95800250770574397.480.182770.180210.20571RANDOM13.013
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.18-0.72-0.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.561
r_scangle_it2.089
r_scbond_it1.277
r_angle_refined_deg1.059
r_mcangle_it0.779
r_mcbond_it0.406
r_nbd_refined0.192
r_symmetry_vdw_refined0.177
r_symmetry_hbond_refined0.136
r_xyhbond_nbd_refined0.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.561
r_scangle_it2.089
r_scbond_it1.277
r_angle_refined_deg1.059
r_mcangle_it0.779
r_mcbond_it0.406
r_nbd_refined0.192
r_symmetry_vdw_refined0.177
r_symmetry_hbond_refined0.136
r_xyhbond_nbd_refined0.1
r_chiral_restr0.075
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4862
Nucleic Acid Atoms
Solvent Atoms556
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
CNSphasing