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Staphylococcus aureus 3-hydroxy-3-methylglutaryl-CoA synthase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 ammonium sulfate, TRIS, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.7 53.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.947 α = 90 b = 64.482 β = 97.17 c = 121.91 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH Osmic 2001-05-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 99 92.2 0.074 9.5 3.2 59484 59484 38.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.59 52.4 0.207 2.6 1.8 3341
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.501 20 52312 2752 85.63 0.19068 0.19068 0.18729 0.1919 0.25493 0.2574 RANDOM 24.728
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.42 0.05 -0.49 -0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.363 r_dihedral_angle_4_deg 22.431 r_dihedral_angle_3_deg 17.252 r_dihedral_angle_1_deg 6.708 r_scangle_it 3.669 r_scbond_it 2.412 r_angle_refined_deg 1.935 r_mcangle_it 1.463 r_mcbond_it 0.843 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.363 r_dihedral_angle_4_deg 22.431 r_dihedral_angle_3_deg 17.252 r_dihedral_angle_1_deg 6.708 r_scangle_it 3.669 r_scbond_it 2.412 r_angle_refined_deg 1.935 r_mcangle_it 1.463 r_mcbond_it 0.843 r_nbtor_refined 0.313 r_symmetry_vdw_refined 0.295 r_nbd_refined 0.232 r_symmetry_hbond_refined 0.167 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.127 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12160 Nucleic Acid Atoms Solvent Atoms 374 Heterogen Atoms 216
Software Software Software Name Purpose HKL-2000 data collection SCALEPACK data scaling AMoRE phasing REFMAC refinement HKL-2000 data reduction