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The X-ray Structure of the Papillomavirus Helicase in Complex with its Molecular Matchmaker E2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6 277 7-10% PEG 3,350, 50mM MES, 20-40mM MgCl, pH 6.0, Microbatch, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.3 46.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.297 α = 90 b = 88.745 β = 90 c = 375.027 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 315 2002-11-28 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.483,1.501 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 99 0.049 3.5 161300 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.18 91.4 0.379 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 30 151539 8003 99.04 0.22098 0.22098 0.2188 0.2163 0.2625 0.2588 RANDOM 40.459
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 -0.74 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.347 r_dihedral_angle_4_deg 22.411 r_dihedral_angle_3_deg 16.293 r_dihedral_angle_1_deg 5.124 r_scangle_it 2.106 r_scbond_it 1.332 r_mcangle_it 1.145 r_angle_refined_deg 0.987 r_mcbond_it 0.609 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.347 r_dihedral_angle_4_deg 22.411 r_dihedral_angle_3_deg 16.293 r_dihedral_angle_1_deg 5.124 r_scangle_it 2.106 r_scbond_it 1.332 r_mcangle_it 1.145 r_angle_refined_deg 0.987 r_mcbond_it 0.609 r_nbtor_refined 0.305 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.187 r_symmetry_hbond_refined 0.154 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19217 Nucleic Acid Atoms Solvent Atoms 969 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing