1T9M

X-ray crystal structure of phzG from pseudomonas aeruginosa


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52980.2M lithium sulfate, 0.1M tris, 25% (w/v) PEG 3350, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
239

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.59α = 90
b = 69.02β = 90
c = 89.08γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray105IMAGE PLATERIGAKU RAXIS IV++MSC BLUE CONFOCAL OPTICS2003-03-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-0071.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.95499.70.0381963157925.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.91.9799.90.1595.365984

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 1DNL1.92029938157699.880.186040.18360.23103RANDOM25.574
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.210.860.35
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.729
r_scangle_it5.5
r_scbond_it3.545
r_mcangle_it2.188
r_angle_refined_deg1.954
r_mcbond_it1.351
r_symmetry_vdw_refined0.213
r_nbd_refined0.212
r_symmetry_hbond_refined0.212
r_xyhbond_nbd_refined0.177
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.729
r_scangle_it5.5
r_scbond_it3.545
r_mcangle_it2.188
r_angle_refined_deg1.954
r_mcbond_it1.351
r_symmetry_vdw_refined0.213
r_nbd_refined0.212
r_symmetry_hbond_refined0.212
r_xyhbond_nbd_refined0.177
r_chiral_restr0.162
r_bond_refined_d0.025
r_gen_planes_refined0.011
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3296
Nucleic Acid Atoms
Solvent Atoms371
Heterogen Atoms82

Software

Software
Software NamePurpose
REFMACrefinement
CrystalCleardata reduction
d*TREKdata scaling
CNSphasing