1SNL

NMR Solution Structure of the Calcium-binding Domain of Nucleobindin (CALNUC)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
115N-HSQC, 3D-15N_separated-NOESY1mM Ca-binding domain of nucleobindin, U-15N, 5mM CaCl2, 0.1mM NaN3, pH 6.890% H2O/10% D2O5 mM CaCl2, 0.1 mM NaN3, 5mM KCl6.8ambient300
24D-15N,13C_separated_NOESY, HNCO, CBCACONH, HNCACB, HCONHCCONH1mM Ca-binding domain of nucleobindin, U-15N,U-13C, 5mM CaCl2, 0.1mM NaN3, pH 6.890% H2O/10% D2O5 mM CaCl2, 0.1 mM NaN3, 5mM KCl6.8ambient300
34D-13C,13C_separated_NOESY,HCCH-TOCSY1mM Ca-binding domain of nucleobindin, U-15N,U-13C, 5mM CaCl2, 0.1mM NaN3, pH 6.8100% D2O5 mM CaCl2, 0.1 mM NaN3, 5mM KCl6.8ambient300
4HNCO, HCACONH, 13C-HSQC_JMOD0.7mM Ca-binding domain of nucleobindin, U-15N,U-13C, 5mM CaCl2, 0.1mM NaN3, pH 6.890% H2O, 10% D2O, Pf1 bacteriophage5 mM CaCl2, 0.1 mM NaN3, 5mM KCl6.8ambient300
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2BrukerAVANCE800
NMR Refinement
MethodDetailsSoftware
distance geometry simulated annealingResidual dipolar couplings used for structure refinement. Residues 1-17, 47-63, 95-99 are flexible and were not considered in the superposition of the 20 structures.UXNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionUXNMR2.5Bruker
2data analysisXwinNMR2.5Bruker
3processingNMRPipe2.1Delaglio, F.
4data analysisPIPP4.2.8Garrett, D.
5refinementXPLOR-NIH2.9.3Schwieters, kuszewski, Tjandra, Clore