1SN6

NMR solution structure of human Saposin C in SDS micelles


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY1mM saposin C U-15N; 25mM sodium dodecyl sulfate U-2H; 0.01% sodium azide; 90% H20, 10% D2090% H20, 10% D2025mM sodium dodecyl sulfate U-2H; 0.01% sodium azide6.8ambient298
24D_13C/15N-separated_NOESY1mM saposin C U-15N, U-13C; 25mM sodium dodecyl sulfate U-2H; 0.01% sodium azide; 90% H20, 10% D2090% H20, 10% D2025mM sodium dodecyl sulfate U-2H; 0.01% sodium azide6.8ambient298
34D_13C-separated_NOESY1mM saposin C U-15N, U-13C; 25mM sodium dodecyl sulfate U-2H; 0.01% sodium azide; 100% D20100% D2025mM sodium dodecyl sulfate U-2H; 0.01% sodium azide6.4ambient298
4CBCACONH1mM saposin C U-15N, U-13C; 25mM sodium dodecyl sulfate U-2H; 0.01% sodium azide; 90% H20, 10% D2090% H20, 10% D2025mM sodium dodecyl sulfate U-2H; 0.01% sodium azide6.8ambient298
5CBCANH1mM saposin C U-15N, U-13C; 25mM sodium dodecyl sulfate U-2H; 0.01% sodium azide; 90% H20, 10% D2090% H20, 10% D2025mM sodium dodecyl sulfate U-2H; 0.01% sodium azide6.8ambient298
6HNCO1mM saposin C U-15N, U-13C; 25mM sodium dodecyl sulfate U-2H; 0.01% sodium azide; 90% H20, 10% D2090% H20, 10% D2025mM sodium dodecyl sulfate U-2H; 0.01% sodium azide6.8ambient298
715N-HSQC1mM saposin C U-15N; 25mM sodium dodecyl sulfate U-2H; 0.01% sodium azide; 90% H20, 10% D2090% H20, 10% D2025mM sodium dodecyl sulfate U-2H; 0.01% sodium azide6.8ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX600
2BrukerDMX800
NMR Refinement
MethodDetailsSoftware
distance geometry simulated annealingThe structures are based on 1854 NOE-derived distance restraints, 117 dihedral angle restraints, and 56 distance restraints derived from hydrogen bond.XwinNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe structure was determined in the presence of detergent micelles.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR2.5Bruker
2processingNMRPipe2.1Delaglio, Grzesiek, Zhu, Vuister, Pfeifer, Bax
3data analysisPIPP4.2.8Garrett
4refinementXPLOR-NIH2.9.3Schwieters, Kuszewski, Tjandra, Clore