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Protease-like domain from 2-chain hepatocyte growth factor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 292 NaCl, CaCl2, PEG 1500, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.14 60.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.7 α = 90 b = 63.7 β = 90 c = 135.1 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.000 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.53 50 98 0.246 24 5 10933 10933 -3 56
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.53 2.62 83 0.368 2.7 4 886
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.53 42.64 0.02 10933 10399 531 98 0.248 0.248 0.246 0.301 0.2737 RANDOM 39.703
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.73 0.36 0.73 -1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.606 r_dihedral_angle_3_deg 16.101 r_dihedral_angle_4_deg 15.707 r_mcangle_it 6.52 r_scangle_it 5.692 r_dihedral_angle_1_deg 4.846 r_scbond_it 4.11 r_mcbond_it 4.099 r_angle_refined_deg 1.48 r_nbd_refined 0.244
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.606 r_dihedral_angle_3_deg 16.101 r_dihedral_angle_4_deg 15.707 r_mcangle_it 6.52 r_scangle_it 5.692 r_dihedral_angle_1_deg 4.846 r_scbond_it 4.11 r_mcbond_it 4.099 r_angle_refined_deg 1.48 r_nbd_refined 0.244 r_symmetry_vdw_refined 0.227 r_xyhbond_nbd_refined 0.19 r_chiral_restr 0.107 r_symmetry_hbond_refined 0.083 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1765 Nucleic Acid Atoms Solvent Atoms 33 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement TRUNCATE data reduction AMoRE phasing X-PLOR refinement HKL-2000 data collection HKL-2000 data reduction CCP4 data scaling