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Structure of At3g01050, a ubiquitin-fold protein from Arabidopsis thaliana
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_15N-separated_NOESY 0.5 mM U-15N,13C At3g01050; 10mM phosphate buffer, 50mM KCl, 1mM DTT, pH 6.5 90% H2O/10% D2O 50 mM NaCl + 10 mM KPO4 6.5 1 atm 298 2 3D_13C-separated_NOESY 0.5 mM U-15N,13C At3g01050; 10mM phosphate buffer, 50mM KCl, 1mM DTT, pH 6.5 90% H2O/10% D2O 50 mM NaCl + 10 mM KPO4 6.5 1 atm 298 3 3D 13C-separated NOESY-aromatic 0.5 mM U-15N,13C At3g01050; 10mM phosphate buffer, 50mM KCl, 1mM DTT, pH 6.5 90% H2O/10% D2O 50 mM NaCl + 10 mM KPO4 6.5 1 atm 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 600
NMR Refinement Method Details Software torsion angle dynamics followed by cartesian molecular dynamics in explicit solvent CANDID automated refinement
Cyana refinement
Xplor water refinement CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Additional NMR Experimental Information Details Chemical shift assignments were obtained from standard 3D triple-resonance experiments, using the automated method of Garant (Christian Bartels).
Computation: NMR Software # Classification Version Software Name Author 1 refinement CYANA 1.0.6 Peter Guentert 2 collection XwinNMR 3.1 Bruker Biospin 3 processing NMRPipe 2.1 Frank Delaglio 4 refinement XPLOR-NIH 2.0.6 Marius Clore 5 data analysis XEASY 1.3.1 Christian Bartels 6 data analysis SPSCAN 1.1.0 Ralf Glaser