1R9C

Crystal Structure of Fosfomycin Resistance Protein FosX from Mesorhizobium Loti


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.5295PEG8000, Tris, Li2SO4, MnCl2, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
1.9536.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.034α = 90
b = 84.024β = 90
c = 66.861γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVmirrors2002-09-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.833091.10.07717.93.821017-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.831.955.80.4141.92.61263

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1LQP1.83302103418860139187.830.20460.20460.201790.24307RANDOM26.16
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.943.23-1.29
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.293
r_scangle_it3.769
r_scbond_it2.537
r_mcangle_it1.426
r_angle_refined_deg1.363
r_mcbond_it0.788
r_symmetry_vdw_refined0.233
r_nbd_refined0.197
r_xyhbond_nbd_refined0.144
r_symmetry_hbond_refined0.108
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.293
r_scangle_it3.769
r_scbond_it2.537
r_mcangle_it1.426
r_angle_refined_deg1.363
r_mcbond_it0.788
r_symmetry_vdw_refined0.233
r_nbd_refined0.197
r_xyhbond_nbd_refined0.144
r_symmetry_hbond_refined0.108
r_chiral_restr0.101
r_bond_refined_d0.015
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1950
Nucleic Acid Atoms
Solvent Atoms121
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
CNSphasing