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Glycogen synthase kinase-3 beta in complex with 3-indolyl-4-arylmaleimide inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H8F PDB ENTRY 1H8F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.4 277 PEG3350, ammonium fluoride, pH 7.4, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.64 66.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.957 α = 90 b = 84.009 β = 90 c = 180.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 25 98.3 0.046 4.6 60350 60350 44.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.33 99.5 0.368 6047
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1H8F 2.25 91.29 60349 3062 98.37 0.22455 0.22309 0.25171 RANDOM 44.592
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.13 1.23 -2.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.68 r_scangle_it 3.403 r_scbond_it 2.036 r_mcangle_it 1.511 r_angle_refined_deg 1.268 r_mcbond_it 0.783 r_nbd_refined 0.205 r_symmetry_vdw_refined 0.161 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.085
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.68 r_scangle_it 3.403 r_scbond_it 2.036 r_mcangle_it 1.511 r_angle_refined_deg 1.268 r_mcbond_it 0.783 r_nbd_refined 0.205 r_symmetry_vdw_refined 0.161 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.085 r_symmetry_hbond_refined 0.07 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5520 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing