1QNL

AMIDE RECEPTOR/NEGATIVE REGULATOR OF THE AMIDASE OPERON OF PSEUDOMONAS AERUGINOSA (AMIC) COMPLEXED WITH BUTYRAMIDE


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH7MICROBATCH CRYSTALLISATION. WELLS CONTAIN 12.8MG/ML PAC181-AMIC, 5MM BUTYRAMIDE, 1.36M NA CITRATE, 100MM HEPES-NAOH PH7.5, pH 7.00
Crystal Properties
Matthews coefficientSolvent content
2.1643

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 104.15α = 90
b = 104.15β = 90
c = 65.68γ = 90
Symmetry
Space GroupP 42 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMIRRORS1996-12-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.73897.80.0984.52.710389154.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.8497.20.1853.82.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1PEA2.7159546477970.2690.314RANDOM27.38
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor30.4
p_staggered_tor20.3
p_special_tor15
p_scangle_it3.012
p_planar_tor2.8
p_scbond_it1.967
p_mcangle_it1.665
p_mcbond_it0.97
p_multtor_nbd0.254
p_singtor_nbd0.193
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor30.4
p_staggered_tor20.3
p_special_tor15
p_scangle_it3.012
p_planar_tor2.8
p_scbond_it1.967
p_mcangle_it1.665
p_mcbond_it0.97
p_multtor_nbd0.254
p_singtor_nbd0.193
p_xyhbond_nbd0.181
p_chiral_restr0.099
p_angle_d0.03
p_planar_d0.029
p_plane_restr0.0166
p_bond_d0.007
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2914
Nucleic Acid Atoms
Solvent Atoms43
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing