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The crystal structure of plant sulfite oxidase provides insight into sulfite oxidation in plants and animals
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SOX PDB ENTRY 1SOX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9.2 5-12% JEFFAMINE 600, 50 MM TRIS/HCL, 10 MM CSCL, PH 9.2
Crystal Properties Matthews coefficient Solvent content 5.7 78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 222.918 α = 90 b = 351.271 β = 90 c = 158.282 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD BENT CONICAL SI-MIRROR 2002-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 30 99.5 0.11 21.6 5.9 199819 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.64 99.5 0.887 2.03 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SOX 2.6 182.57 178219 9369 99 0.237 0.235 0.2407 0.266 0.267 RANDOM 52.49
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 -1.25 1.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.408 r_scangle_it 6.193 r_scbond_it 4.815 r_mcangle_it 3.585 r_angle_refined_deg 2.614 r_mcbond_it 2.453 r_angle_other_deg 1.775 r_metal_ion_refined 0.556 r_symmetry_vdw_other 0.319 r_symmetry_vdw_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.408 r_scangle_it 6.193 r_scbond_it 4.815 r_mcangle_it 3.585 r_angle_refined_deg 2.614 r_mcbond_it 2.453 r_angle_other_deg 1.775 r_metal_ion_refined 0.556 r_symmetry_vdw_other 0.319 r_symmetry_vdw_refined 0.303 r_xyhbond_nbd_refined 0.286 r_nbd_other 0.272 r_nbd_refined 0.27 r_symmetry_hbond_refined 0.198 r_chiral_restr 0.177 r_nbtor_other 0.107 r_bond_refined_d 0.034 r_gen_planes_refined 0.013 r_gen_planes_other 0.01 r_bond_other_d 0.004 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18084 Nucleic Acid Atoms Solvent Atoms 594 Heterogen Atoms 210
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing BEAST phasing REFMAC refinement