1OBW

STRUCTURE OF INORGANIC PYROPHOSPHATASE


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.5pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.3440

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 110.3α = 90
b = 110.3β = 90
c = 78.2γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEMARRESEARCH1996-05-26M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.92099.70.05146411903
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9599.20.24443

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPL.REFINED STRUCTURE OF APO-FORM OF THIS ENZYME AT 2.2A. (HARUTYUNYAN ET AL., 1996, CRYSTALLOGRAPHIA(RUS), V.14 ,PP84-96.1.91513606000.1760.2234
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor22.5
p_staggered_tor19.4
p_scangle_it5.37
p_scbond_it5.166
p_mcangle_it4.664
p_mcbond_it1.927
p_multtor_nbd0.255
p_xyhbond_nbd0.187
p_singtor_nbd0.173
p_chiral_restr0.142
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor22.5
p_staggered_tor19.4
p_scangle_it5.37
p_scbond_it5.166
p_mcangle_it4.664
p_mcbond_it1.927
p_multtor_nbd0.255
p_xyhbond_nbd0.187
p_singtor_nbd0.173
p_chiral_restr0.142
p_planar_d0.034
p_angle_d0.031
p_bond_d0.014
p_angle_deg
p_hb_or_metal_coord
p_plane_restr
p_xhyhbond_nbd
p_planar_tor
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4137
Nucleic Acid Atoms
Solvent Atoms250
Heterogen Atoms7

Software

Software
Software NamePurpose
AMoREphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling