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Structure of electron transferring flavoprotein for Methylophilus methylotrophus.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 SATURATED SODIUM CITRATE, pH 9.00
Crystal Properties Matthews coefficient Solvent content 3.3 62.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.516 α = 90 b = 126.877 β = 90 c = 221.39 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2002-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 20 98.6 0.091 9.5 3 58411
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.2 98.5 0.301 2.1 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.1 19.92 56199 2989 100 0.215 0.212 0.2071 0.278 0.2666 RANDOM 55.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.66 4.75 -2.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.36 r_dihedral_angle_4_deg 22.956 r_dihedral_angle_3_deg 21.045 r_dihedral_angle_1_deg 8.933 r_scangle_it 7.078 r_scbond_it 4.306 r_angle_refined_deg 2.813 r_mcangle_it 2.376 r_mcbond_it 1.219 r_symmetry_vdw_refined 0.388
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.36 r_dihedral_angle_4_deg 22.956 r_dihedral_angle_3_deg 21.045 r_dihedral_angle_1_deg 8.933 r_scangle_it 7.078 r_scbond_it 4.306 r_angle_refined_deg 2.813 r_mcangle_it 2.376 r_mcbond_it 1.219 r_symmetry_vdw_refined 0.388 r_nbd_refined 0.278 r_xyhbond_nbd_refined 0.193 r_chiral_restr 0.164 r_symmetry_hbond_refined 0.14 r_bond_refined_d 0.032 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16789 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 304
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing