X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.2293Phophate/citrate, PEG 300, pH 4.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4148.55

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.689α = 90
b = 92.571β = 90
c = 37.159γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-09-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX14.11.448SRSPX14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1239.298.7493092235.59
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.05297.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1NXT239.222850092598.740.207910.20150.26857RANDOM35.587
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.22-3.93-0.29
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.307
r_scangle_it5.604
r_scbond_it3.122
r_mcangle_it1.937
r_angle_refined_deg1.861
r_mcbond_it1.014
r_angle_other_deg0.938
r_symmetry_hbond_refined0.518
r_symmetry_vdw_other0.303
r_symmetry_vdw_refined0.29
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.307
r_scangle_it5.604
r_scbond_it3.122
r_mcangle_it1.937
r_angle_refined_deg1.861
r_mcbond_it1.014
r_angle_other_deg0.938
r_symmetry_hbond_refined0.518
r_symmetry_vdw_other0.303
r_symmetry_vdw_refined0.29
r_nbd_other0.249
r_nbd_refined0.248
r_xyhbond_nbd_refined0.228
r_chiral_restr0.118
r_nbtor_other0.092
r_bond_refined_d0.02
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms935
Nucleic Acid Atoms
Solvent Atoms68
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
MOLREPphasing