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APOLIPOPROTEIN E2 (APOE2, D154A MUTATION)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NFN PHASING MODEL DERIVED FROM 1NFN
Crystallization Crystal Properties Matthews coefficient Solvent content 3.07 59.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.613 α = 90 b = 53.671 β = 90 c = 84.795 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 130 AREA DETECTOR ADSC M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 15 94.2 0.0509 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT R-FREE PHASING MODEL DERIVED FROM 1NFN 2 8 12485 1248 94.2 0.221 0.206 0.2318 0.27 EVERY 10TH REFLECTION
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation s_angle_d 2 s_from_restr_planes 0.103 s_zero_chiral_vol 0.06 s_anti_bump_dis_restr 0.052 s_approx_iso_adps 0.047 s_similar_adp_cmpnt 0.038 s_bond_d 0.01 s_similar_dist s_non_zero_chiral_vol s_rigid_bond_adp_cmpnt
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1075 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms
Software Software Software Name Purpose SHELXL-93 model building X-PLOR model building SHELXL-93 refinement X-PLOR refinement ADSC data collection SHELXL-93 phasing X-PLOR phasing