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ENGINEERED LIPOCALIN FLUA IN COMPLEX WITH FLUORESCEIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KXO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.1 298 2.0 M (NH4)2SO4, 2% (w/v) PEG 400, 10 mM hepes/naoh, pH 8.1, VAPOR DIFFUSION, HANGING DROP, temperature 298 KK
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.797 α = 90 b = 85.039 β = 106.18 c = 66.059 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray AREA DETECTOR MARRESEARCH osmic confocal maxflux 2001-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 99 95.8 0.05 17.64 5.39 29552 29552
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 96.1 0.47 2.73 2.73 2956
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1kxo 2 63.25 27943 1482 95.66 0.19562 0.19314 0.1966 0.24328 RANDOM 34.125
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.09 -0.6 0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.472 r_scangle_it 3.858 r_mcangle_it 3.459 r_angle_refined_deg 2.671 r_scbond_it 2.454 r_mcbond_it 2.072 r_symmetry_vdw_refined 0.273 r_symmetry_hbond_refined 0.248 r_nbd_refined 0.24 r_xyhbond_nbd_refined 0.182
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.472 r_scangle_it 3.858 r_mcangle_it 3.459 r_angle_refined_deg 2.671 r_scbond_it 2.454 r_mcbond_it 2.072 r_symmetry_vdw_refined 0.273 r_symmetry_hbond_refined 0.248 r_nbd_refined 0.24 r_xyhbond_nbd_refined 0.182 r_chiral_restr 0.147 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2780 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 55
Software Software Software Name Purpose MAR345 data collection SCALEPACK data scaling EPMR phasing REFMAC refinement