1MO2

Thioesterase Domain from 6-Deoxyerythronolide Synthase (DEBS TE), pH 8.5


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.5277PEG 400, bicine, magnesium chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP at 277K
Crystal Properties
Matthews coefficientSolvent content
679.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.5α = 90
b = 102.5β = 90
c = 156.5γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray190CCDADSC QUANTUM 41999-12-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.21.000ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
133099.50.1039.713.2264401
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
33.051000.511.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1KEZ3302661422595122389.60.25950.244470.242150.28663RANDOM18.64
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.4-1.03-3.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg12.597
r_scangle_it6.983
r_scbond_it4.183
r_angle_refined_deg3.562
r_mcangle_it2.47
r_mcbond_it1.318
r_symmetry_vdw_refined0.748
r_symmetry_hbond_refined0.57
r_nbd_refined0.336
r_xyhbond_nbd_refined0.241
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg12.597
r_scangle_it6.983
r_scbond_it4.183
r_angle_refined_deg3.562
r_mcangle_it2.47
r_mcbond_it1.318
r_symmetry_vdw_refined0.748
r_symmetry_hbond_refined0.57
r_nbd_refined0.336
r_xyhbond_nbd_refined0.241
r_chiral_restr0.24
r_bond_refined_d0.043
r_gen_planes_refined0.012
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_2_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3776
Nucleic Acid Atoms
Solvent Atoms56
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
CNSrefinement
DENZOdata reduction
CNSphasing