1MGO

Horse Liver Alcohol Dehydrogenase Phe93Ala Mutant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1Dialysis7277MPD, pH 7.0, Dialysis, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.4249.18

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.144α = 91.98
b = 51.308β = 103.01
c = 93.481γ = 109.81
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVconfocal osmic2001-07-25MSINGLE WAVELENGTH
21x-ray100CCDMARRESEARCH2001-11-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.5418
2SYNCHROTRONAPS BEAMLINE 17-ID1.0000APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.2200.0730.0735.32.25199442
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.21.2484.50.290.291.51.46

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1HLD1.220199422201786.290.187720.18750.20881RANDOM17.199
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.480.720.181.320.45-1.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.118
r_scangle_it4.551
r_angle_other_deg3.791
r_scbond_it3.138
r_mcangle_it2.454
r_angle_refined_deg1.843
r_mcbond_it1.813
r_symmetry_vdw_other0.265
r_nbd_refined0.214
r_symmetry_vdw_refined0.169
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.118
r_scangle_it4.551
r_angle_other_deg3.791
r_scbond_it3.138
r_mcangle_it2.454
r_angle_refined_deg1.843
r_mcbond_it1.813
r_symmetry_vdw_other0.265
r_nbd_refined0.214
r_symmetry_vdw_refined0.169
r_chiral_restr0.12
r_nbd_other0.108
r_symmetry_hbond_refined0.104
r_xyhbond_nbd_refined0.098
r_bond_refined_d0.019
r_gen_planes_other0.013
r_gen_planes_refined0.01
r_bond_other_d
r_dihedral_angle_2_deg
r_nbtor_other
r_xyhbond_nbd_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5558
Nucleic Acid Atoms
Solvent Atoms460
Heterogen Atoms92

Software

Software
Software NamePurpose
d*TREKdata scaling
d*TREKdata reduction
AMoREphasing
REFMACrefinement