Experiment: 1MBM

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6		PEG 8000, sodium cirate, ethylene glycol, sodium malonate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 105K

Crystal Properties
Matthews coefficient	Solvent content
2.13	42.25

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 56.612	α = 74.08
b = 60.326	β = 63.3
c = 62.637	γ = 66.18

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	105	IMAGE PLATE	RIGAKU RAXIS IV	Osmic confocal mirrors	2001-09-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU RU300	1.5418

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	20	95	0.05	0.05	22.4	3.9	43171	43171		-3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.07	91.5		0.179	0.179	6.1	3.7	4151

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MIR	THROUGHOUT	2	16.22	43166	43166	2161	95	0.208	0.20726	0.20441	0.2	0.2609	0.25	RANDOM	15.565

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.64	-0.89	0.28	2.07	0.35	-1.16

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	19.343
r_scangle_it	5.69
r_scbond_it	4.051
r_dihedral_angle_1_deg	3.649
r_mcangle_it	3.044
r_mcbond_it	1.854
r_angle_refined_deg	1.271
r_nbd_refined	0.185
r_symmetry_vdw_refined	0.133
r_xyhbond_nbd_refined	0.123

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	19.343
r_scangle_it	5.69
r_scbond_it	4.051
r_dihedral_angle_1_deg	3.649
r_mcangle_it	3.044
r_mcbond_it	1.854
r_angle_refined_deg	1.271
r_nbd_refined	0.185
r_symmetry_vdw_refined	0.133
r_xyhbond_nbd_refined	0.123
r_symmetry_hbond_refined	0.121
r_chiral_restr	0.083
r_bond_refined_d	0.007
r_gen_planes_refined	0.004

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5597
Nucleic Acid Atoms
Solvent Atoms	400
Heterogen Atoms

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
REFMAC	refinement

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.