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NSP4 proteinase from Equine Arteritis Virus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 PEG 8000, sodium cirate, ethylene glycol, sodium malonate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 105K
Crystal Properties Matthews coefficient Solvent content 2.13 42.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.612 α = 74.08 b = 60.326 β = 63.3 c = 62.637 γ = 66.18
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 IMAGE PLATE RIGAKU RAXIS IV Osmic confocal mirrors 2001-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 95 0.05 0.05 22.4 3.9 43171 43171 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 91.5 0.179 0.179 6.1 3.7 4151
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2 16.22 43166 43166 2161 95 0.208 0.20726 0.20441 0.2006 0.2609 0.2463 RANDOM 15.565
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 -0.89 0.28 2.07 0.35 -1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.343 r_scangle_it 5.69 r_scbond_it 4.051 r_dihedral_angle_1_deg 3.649 r_mcangle_it 3.044 r_mcbond_it 1.854 r_angle_refined_deg 1.271 r_nbd_refined 0.185 r_symmetry_vdw_refined 0.133 r_xyhbond_nbd_refined 0.123
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.343 r_scangle_it 5.69 r_scbond_it 4.051 r_dihedral_angle_1_deg 3.649 r_mcangle_it 3.044 r_mcbond_it 1.854 r_angle_refined_deg 1.271 r_nbd_refined 0.185 r_symmetry_vdw_refined 0.133 r_xyhbond_nbd_refined 0.123 r_symmetry_hbond_refined 0.121 r_chiral_restr 0.083 r_bond_refined_d 0.007 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5597 Nucleic Acid Atoms Solvent Atoms 400 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing REFMAC refinement