1LNM

ANTICALIN DIGA16 IN COMPLEX WITH DIGITOXIGENIN


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.82980.1-M hepes, 10% isopropanol, 19% peg 4000, pH 7.80, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.551.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.129α = 90
b = 63.874β = 91.87
c = 39.329γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298IMAGE PLATEMAR scanner 345 mm plateosmic confocal flux2001-09-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU300

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.937.5390.80.11211.654.311343013430-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.91.97940.242.621.91380

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUTPDB ENTRY 1LKE1.948.81271267290.820.206370.204350.24454RANDOM30.722
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.29-0.01-2.111.82
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it8.256
r_dihedral_angle_1_deg7.537
r_mcangle_it7.033
r_scbond_it6.414
r_mcbond_it5.1
r_angle_refined_deg2.322
r_angle_other_deg1.057
r_symmetry_hbond_refined0.281
r_symmetry_vdw_other0.268
r_xyhbond_nbd_refined0.265
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it8.256
r_dihedral_angle_1_deg7.537
r_mcangle_it7.033
r_scbond_it6.414
r_mcbond_it5.1
r_angle_refined_deg2.322
r_angle_other_deg1.057
r_symmetry_hbond_refined0.281
r_symmetry_vdw_other0.268
r_xyhbond_nbd_refined0.265
r_nbd_other0.253
r_nbd_refined0.22
r_symmetry_vdw_refined0.213
r_chiral_restr0.144
r_nbtor_other0.106
r_bond_refined_d0.014
r_gen_planes_refined0.007
r_gen_planes_other0.005
r_bond_other_d0.001
r_dihedral_angle_2_deg
r_xyhbond_nbd_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1268
Nucleic Acid Atoms
Solvent Atoms45
Heterogen Atoms27

Software

Software
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
CNSrefinement
DENZOdata reduction
CNSphasing