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Crystal Structure of spinach chloroplast F1-ATPase complexed with tentoxin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FX0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7.5 293 Lithium sulfate, HEPES, dithiotreitol, pH 7.5, MICRO BATCH, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.62 66.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.887 α = 90 b = 146.887 β = 90 c = 381.679 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2001-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 0.8452 EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 20 92.5 0.089 9.43 18266 -3 88.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.4 3.52 79.9 0.383 2.51 1713
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1FX0 3.4 6 15805 858 92.52 0.29788 0.29675 0.31895 RANDOM 134.533
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.33 -1.16 -2.33 3.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 20.954 r_scangle_it 9.927 r_scbond_it 5.781 r_mcangle_it 5.371 r_rigid_bond_restr 3.621 r_mcbond_it 2.891 r_dihedral_angle_1_deg 2.536 r_angle_refined_deg 1.995 r_sphericity_bonded 1.859 r_angle_other_deg 1.052
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 20.954 r_scangle_it 9.927 r_scbond_it 5.781 r_mcangle_it 5.371 r_rigid_bond_restr 3.621 r_mcbond_it 2.891 r_dihedral_angle_1_deg 2.536 r_angle_refined_deg 1.995 r_sphericity_bonded 1.859 r_angle_other_deg 1.052 r_symmetry_vdw_other 0.393 r_symmetry_vdw_refined 0.298 r_nbd_other 0.289 r_nbd_refined 0.287 r_symmetry_hbond_refined 0.229 r_xyhbond_nbd_refined 0.191 r_xyhbond_nbd_other 0.154 r_chiral_restr 0.103 r_bond_refined_d 0.025 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.003 r_nbtor_other r_symmetry_hbond_other r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7187 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement CNS refinement DENZO data reduction CCP4 data scaling CNS phasing