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Crystal Structure of the Yeast Mitochondrial Holliday Junction Resolvase, Ydc2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 4.6 287 Ammonium Sulphate, Sodium acetate, pH 4.6, microbatch, temperature 287K 2 MICROBATCH 8.5 287 Dihydrogen Phosphate, Tris-Hcl, pH 8.5, microbatch, temperature 287K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72 α = 90 b = 133.94 β = 90 c = 73.25 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH Mirrors 2001-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.93400 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 29.34 91.9 0.04 0.034 16 3.6 35212 31239 2 2 43.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 90.5 0.2 0.17 3.6 3.2 4787
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Single Wavelength Anomalous Dispersion THROUGHOUT 2.3 29.34 31239 31239 1518 95 0.242 0.242 0.238 0.27 RANDOM 55.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 13.7 -7.53 -6.17
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.1 c_scangle_it 3.63 c_mcangle_it 2.79 c_scbond_it 2.68 c_mcbond_it 1.65 c_angle_deg 1 c_improper_angle_d 0.65 c_bond_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3738 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 10
Software Software Software Name Purpose SOLVE phasing RESOLVE model building CNS refinement DENZO data reduction CCP4 data scaling RESOLVE phasing