1KCF
Crystal Structure of the Yeast Mitochondrial Holliday Junction Resolvase, Ydc2
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1kcfa1 | All alpha proteins | LEM/SAP HeH motif | SAP domain | SAP domain | Mitochondrial resolvase ydc2 N-terminal domain | fission yeast (Schizosaccharomyces pombe ) [TaxId: 4896 ], | SCOPe (2.08) |
A | d1kcfa2 | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | Mitochondrial resolvase ydc2 catalytic domain | Mitochondrial resolvase ydc2 catalytic domain | fission yeast (Schizosaccharomyces pombe ) [TaxId: 4896 ], | SCOPe (2.08) |
B | d1kcfb1 | All alpha proteins | LEM/SAP HeH motif | SAP domain | SAP domain | Mitochondrial resolvase ydc2 N-terminal domain | fission yeast (Schizosaccharomyces pombe ) [TaxId: 4896 ], | SCOPe (2.08) |
B | d1kcfb2 | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | Mitochondrial resolvase ydc2 catalytic domain | Mitochondrial resolvase ydc2 catalytic domain | fission yeast (Schizosaccharomyces pombe ) [TaxId: 4896 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | SAP domain | 8025652 | 4002795 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Mitochondrial resolvase ydc2 catalytic domain | 8025655 | 4003295 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | SAP domain | 8038031 | 3001760 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ribonuclease H-like | 8038034 | 3000143 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Ribonuclease H-like | 8038034 | 3000143 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SAP | e1kcfA1 | A: alpha arrays | X: LEM/SAP HeH motif-like | H: LEM/SAP HeH motif | T: LEM/SAP HeH motif | F: SAP | ECOD (1.6) |
A | Ydc2-catalyt | e1kcfA2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ydc2-catalyt | ECOD (1.6) |
B | SAP | e1kcfB1 | A: alpha arrays | X: LEM/SAP HeH motif-like | H: LEM/SAP HeH motif | T: LEM/SAP HeH motif | F: SAP | ECOD (1.6) |
B | Ydc2-catalyt | e1kcfB2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ydc2-catalyt | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
B | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09159 | Mitochondrial resolvase Ydc2 / RNA splicing MRS1 (Ydc2-catalyt) | Mitochondrial resolvase Ydc2 / RNA splicing MRS1 | Members of this family adopt a secondary structure consisting of two beta sheets and one alpha helix, arranged as a beta-alpha-beta motif. Each beta sheet has five strands, arranged in a 32145 order, with the second strand being antiparallel to the ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR003034 | SAP domain | Domain | |
IPR036361 | SAP domain superfamily | Homologous Superfamily | |
IPR039197 | Mrs1/Cce1 | Family | |
IPR015242 | Mitochondrial resolvase Ydc2, catalytic | Domain | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |