1K42

The Solution Structure of the CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_13C-separated_NOESY1.5 mM CBM4-2 15N-labelled, and 13C,15N double labelled protein; 50 mM CaCl2, 50 mM sodium acetate-d3, pH 6.0, 10% D2O, 10 mM sodium azide, 0.1 mM sodium trimethylsilylpropionate (TSP)90% H2O/10% D2O0.2 M6.0ambient310
23D_15N-separated_NOESY1.5 mM CBM4-2 15N-labelled, and 13C,15N double labelled protein; 50 mM CaCl2, 50 mM sodium acetate-d3, pH 6.0, 10% D2O, 10 mM sodium azide, 0.1 mM sodium trimethylsilylpropionate (TSP)90% H2O/10% D2O0.2 M6.0ambient310
3HNHA1.5 mM CBM4-2 15N-labelled, and 13C,15N double labelled protein; 50 mM CaCl2, 50 mM sodium acetate-d3, pH 6.0, 10% D2O, 10 mM sodium azide, 0.1 mM sodium trimethylsilylpropionate (TSP)90% H2O/10% D2O0.2 M6.0ambient310
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
2BrukerDRX600
NMR Refinement
MethodDetailsSoftware
hybrid distance geometry/simulated annealing using XPLORThe final set of restraints contained 1654 non-redundant unambiguous NOEs and 17 ambiguous NOEs, 93 dihedral angle restraints, 72 chi1 and 1 chi2 restraint, and 65 pairs of hydrogen bond restraints, plus 177 backbone dihedral restraints based on 13C shifts from TALOS.Felix
NMR Ensemble Information
Conformer Selection Criteriastructures with acceptable covalent geometry,structures with the least restraint violations,structures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number12
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingFelix2000Molecular Simulations Inc.
2structure solutionX-PLOR3.1Axel T. Brunger
3refinementX-PLOR3.1Axel T. Brunger