1JKN

Solution Structure of the Nudix Enzyme Diadenosine Tetraphosphate Hydrolase from Lupinus angustifolius Complexed with ATP


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1HNHA1.6 mM U-15N, U-13C Ap4A hydrolase 1.6 mM ATP 20 mM U-100% 2H imidazole 32 mM NaF 20 mM MgCl290% H2O/10% D2O120 mM6.5ambient298
23D_15N-separated_NOESY1.6 mM U-15N, U-13C Ap4A hydrolase 1.6 mM ATP 20 mM U-100% 2H imidazole 32 mM NaF 20 mM MgCl290% H2O/10% D2O120 mM6.5ambient298
33D_13C-separated_NOESY1.6 mM U-15N, U-13C Ap4A hydrolase 1.6 mM ATP 20 mM U-100% 2H imidazole 32 mM NaF 20 mM MgCl2100% D2O120 mM6.5ambient298
42D_doubly-tuned_13C_15N-filtered_NOESY1.6 mM U-15N, U-13C Ap4A hydrolase 1.6 mM ATP 20 mM U-100% 2H imidazole 32 mM NaF 20 mM MgCl2100% D2O120 mM6.5ambient298
513C-edited_13C-filtered_NOESY-HSQC1.6 mM U-15N, U-13C Ap4A hydrolase 1.6 mM ATP 20 mM U-100% 2H imidazole 32 mM NaF 20 mM MgCl2100% D2O120 mM6.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics, simulated annealingThe structures are based on a total of 2948 restraints. 2649 are NOE-based distance restraints, 299 are dihedral angle restraints.VNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with favorable non-bond energy, structures with the least restraint violations, target function
Conformers Calculated Total Number100
Conformers Submitted Total Number30
Representative Model21 (lowest energy)
Additional NMR Experimental Information
DetailsDetermined using standard heteronuclear techniques
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.2Varian
2processingNMRPipe1.1Delaglio, et al.
3data analysisXEASY1.4Bartels, et al.
4refinementDYANA1.5Guentert, et al.
5refinementCNS1.0Brunger et al.