1HZ0
NMR STRUCTURE OF THE 2-AMINO-1-METHYL-6-PHENYLIMIDAZO[4,5-B]PYRIDINE (PHIP) C8-DEOXYGUANOSINE ADDUCT IN DUPLEX DNA
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 9.1 mg of [PhIP]dG.dC 11mer duplex in 600 ul of 10 mM Na2PO4 buffer | 100% D2O | 0.1 M NaCl | 7.00 | ambient | 298 | |
2 | 2D NOESY | 9.1 mg of [PhIP]dG.dC 11mer duplex in 600 ul of 10 mM Na2PO4 buffer | 100% D2O | 0.1 M NaCl | 7.00 | ambient | 293 | |
3 | 2D NOESY | 9.1 mg of [PhIP]dG.dC 11mer duplex in 600 ul of 10 mM Na2PO4 buffer | 90% H2O/10% D2O | 0.1 M NaCl | 7.00 | ambient | 274 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
restrainted torsion angle minimizations | A total of 266 NOE-derived distance constraints were used in the calculations | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 48 |
Conformers Submitted Total Number | 6 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homonuclear techniques |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.0 | Varian |
2 | data analysis | Felix | 97 | MSI |
3 | structure solution | DUPLEX | none | Hingerty and Broyde |
4 | refinement | DUPLEX | none | Hingerty and Broyde |