1GZD

Crystal structure of pig phosphoglucose isomerase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17277THE PROTEIN WAS CONCENTRATED TO 10MG/ML AND CRYSTALLIZED AT 4 DEGRESS CELSIUS FROM 10MM SODIUM PHOSPHATE, PH 7.5 AND 57% SATURATED AMMONIUM SULPHATE.
Crystal Properties
Matthews coefficientSolvent content
2.4950.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 95.2α = 90
b = 95.2β = 90
c = 138.3γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray294FILMMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRSSRS

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1831.375.70.073328680

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT2.51518598207591.80.1750.1670.241RANDOM15.02
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.35-0.350.7
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg21.519
r_scangle_it4.315
r_dihedral_angle_1_deg4.11
r_scbond_it2.629
r_angle_other_deg1.809
r_mcangle_it1.49
r_mcbond_it0.768
r_nbd_refined0.249
r_symmetry_vdw_refined0.182
r_xyhbond_nbd_refined0.176
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg21.519
r_scangle_it4.315
r_dihedral_angle_1_deg4.11
r_scbond_it2.629
r_angle_other_deg1.809
r_mcangle_it1.49
r_mcbond_it0.768
r_nbd_refined0.249
r_symmetry_vdw_refined0.182
r_xyhbond_nbd_refined0.176
r_symmetry_hbond_refined0.138
r_chiral_restr0.127
r_bond_refined_d0.018
r_gen_planes_refined0.007
r_bond_other_d
r_angle_refined_deg
r_dihedral_angle_2_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4422
Nucleic Acid Atoms
Solvent Atoms141
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling