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HUMAN 17-BETA-HYDROXYSTEROID-DEHYDROGENASE TYPE 1 MUTANT H221L COMPLEXED WITH ESTRADIOL AND NADP+
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FDT PDB ENTRY 1FDT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.3 PROTEIN WAS CRYSTALLIZED FROM 2 M AMMONIUM SULFATE, 100 MM SODIUM PHOSPHATE BUFFER PH 6.3, 1 MM NADP+, 100 MM NACL; THEN SOAKED IN 30 % PEG 4000, 100 MM HEPES PH 6.5, 100 MM NACL, 0.5 MM ESTRADIOL, 1 MM NADP+
Crystal Properties Matthews coefficient Solvent content 3.96 69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.8 α = 90 b = 78.78 β = 92.91 c = 121.19 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 130 CCD ESRF MIRRORS 1996-02-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM02 ESRF BM02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 40 84 0.092 3.96 57170
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.83 32 0.277 2.36
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1FDT 2.7 10 2 49542 2634 0.22 0.2116 0.295 0.2772 RANDOM 25.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_scangle_it 3.1 p_scbond_it 1.9 p_mcangle_it 1.5 p_mcbond_it 0.8 p_chiral_restr 0.2 p_planar_d 0.052 p_angle_d 0.037 p_bond_d 0.015 p_plane_restr 0.0146 p_angle_deg
RMS Deviations Key Refinement Restraint Deviation p_scangle_it 3.1 p_scbond_it 1.9 p_mcangle_it 1.5 p_mcbond_it 0.8 p_chiral_restr 0.2 p_planar_d 0.052 p_angle_d 0.037 p_bond_d 0.015 p_plane_restr 0.0146 p_angle_deg p_hb_or_metal_coord p_singtor_nbd p_multtor_nbd p_xhyhbond_nbd p_xyhbond_nbd p_planar_tor p_staggered_tor p_orthonormal_tor p_transverse_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8625 Nucleic Acid Atoms Solvent Atoms 218 Heterogen Atoms 272
Software Software Software Name Purpose AMoRE phasing REFMAC refinement XDS data reduction